Index

A

abbreviation (varvis_connector.models.HpoTerm attribute) accession (varvis_connector.models.PersonHpoTerm attribute) (varvis_connector.models.PersonHpoTermDiseaseModifier attribute) accessionId (varvis_connector.models.HpoTerm attribute) acmgCriteria (varvis_connector.models.CaseReportSnvConclusion attribute) acmgVersion (varvis_connector.models.CaseReportSnvConclusion attribute) active (varvis_connector.models.CaseReportMethodsItem attribute) (varvis_connector.models.CaseReportPersonItem attribute) (varvis_connector.models.CaseReportVirtualPanelItem attribute) (varvis_connector.models.VirtualPanelData attribute) (varvis_connector.models.VirtualPanelSummary attribute) (varvis_connector.models.VirtualPanelUpdateData attribute) affectedGenes (varvis_connector.models.CaseReportCnvConclusion attribute) ALLEXES_CNV_found_gain (varvis_connector.models.CnvAnnotations attribute) ALLEXES_CNV_found_loss (varvis_connector.models.CnvAnnotations attribute) ALLEXES_CNV_sig_gain (varvis_connector.models.CnvAnnotations attribute) ALLEXES_CNV_sig_loss (varvis_connector.models.CnvAnnotations attribute) allGenesPanel (varvis_connector.models.CaseReportVirtualPanelItem attribute) analyses (varvis_connector.models.CaseReportMethodsItem attribute) (varvis_connector.models.CaseReportPersonItem attribute) AnalysisApproval (class in varvis_connector.models) analysisApproval (varvis_connector.models.AnalysisItem attribute) AnalysisFileDownloadLinks (class in varvis_connector.models)

analysisId (varvis_connector.models.AnalysisApproval attribute) (varvis_connector.models.CaseReportAnalysis attribute) (varvis_connector.models.CoverageData attribute) (varvis_connector.models.FindByInputFileNameAnalysisItem attribute) (varvis_connector.models.PendingCnvDataItem attribute) (varvis_connector.models.QCCaseMetricResultDataItem attribute) (varvis_connector.models.QCCaseMetricResultItem attribute) analysisIds (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.CaseReportSnvConclusion attribute) AnalysisItem (class in varvis_connector.models) analysisStatus (varvis_connector.models.FindByInputFileNameAnalysisItem attribute) analysisType (varvis_connector.models.AnalysisItem attribute) (varvis_connector.models.CaseReportAnalysis attribute) (varvis_connector.models.FindByInputFileNameAnalysisItem attribute) annotations (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.CaseReportSnvConclusion attribute) (varvis_connector.models.PendingCnvDataItem attribute) annotationSources (varvis_connector.models.CaseReportAnalysis attribute) ApiFileLink (class in varvis_connector.models) apiFileLinks (varvis_connector.models.AnalysisFileDownloadLinks attribute) appliedFilters (varvis_connector.models.CaseReportVirtualPanelItem attribute) approvalTime (varvis_connector.models.AnalysisApproval attribute) approved (varvis_connector.models.CaseReport attribute) approver (varvis_connector.models.CaseReport attribute)

B

badge (varvis_connector.models.BaseHeaderItem attribute) BaseHeaderItem (class in varvis_connector.models) basePairsNotCovered (varvis_connector.models.CoverageData attribute) bedFile (varvis_connector.models.QCCaseMetricEnrichmentKit attribute) bedRegionsSize (varvis_connector.models.QCCaseMetricEnrichmentKit attribute)

bioinfScoreThresholdsByAnalysisId (varvis_connector.models.SnvAnnotationHeaderItem attribute) birthDate (varvis_connector.models.PersonPersonalInformation attribute) birthDateDay (varvis_connector.models.PersonUpdateData attribute) birthDateMonth (varvis_connector.models.PersonUpdateData attribute) birthDateYear (varvis_connector.models.PersonUpdateData attribute) bivariance (varvis_connector.models.CnvTargetResults attribute)

C

canBeDeleted (varvis_connector.models.QCCaseMetricEnrichmentKit attribute) CaseReport (class in varvis_connector.models) CaseReportAnalysis (class in varvis_connector.models) CaseReportAnnotationSource (class in varvis_connector.models) CaseReportAppliedFilter (class in varvis_connector.models) CaseReportCnvConclusion (class in varvis_connector.models) CaseReportConclusion (class in varvis_connector.models) CaseReportDisease (class in varvis_connector.models) CaseReportGene (class in varvis_connector.models) CaseReportMethodsItem (class in varvis_connector.models) CaseReportPersonItem (class in varvis_connector.models) CaseReportSnvConclusion (class in varvis_connector.models) CaseReportVirtualPanelItem (class in varvis_connector.models) categories (varvis_connector.models.QCCaseMetricThresholdRanges attribute) category (varvis_connector.models.SnvAnnotationHeaderItem attribute) cdna (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.CaseReportSnvConclusion attribute) (varvis_connector.models.PendingCnvDataItem attribute) chart (varvis_connector.models.QCCaseMetricTypeDimension attribute) chartTitle (varvis_connector.models.QCCaseMetricType attribute) chromosome (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.CoverageData attribute) (varvis_connector.models.GenomicPosition attribute) (varvis_connector.models.VarvisGene attribute) chromosomeLocation (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.VarvisGene attribute) clinicalAssessment (varvis_connector.models.CaseReportConclusion attribute) clinicalInformation (varvis_connector.models.PersonData attribute) CnvAnnotations (class in varvis_connector.models) cnvConclusions (varvis_connector.models.CaseReportConclusion attribute)

cnvHeader (varvis_connector.models.PendingCnvData attribute) CnvHeaderItem (class in varvis_connector.models) CnvRelativesDataItem (class in varvis_connector.models) CnvTargetResults (class in varvis_connector.models) comment (varvis_connector.models.AnalysisApproval attribute) (varvis_connector.models.CaseReport attribute) (varvis_connector.models.CaseReportConclusion attribute) (varvis_connector.models.CaseReportPersonItem attribute) (varvis_connector.models.PendingCnvDataItem attribute) (varvis_connector.models.PersonPersonalInformation attribute) (varvis_connector.models.PersonUpdateData attribute) commentCount (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.CaseReportSnvConclusion attribute) (varvis_connector.models.PendingCnvDataItem attribute) conclusions (varvis_connector.models.CaseReportVirtualPanelItem attribute) consanguineous (varvis_connector.models.PersonClinicalInformation attribute) consentType (varvis_connector.models.PersonPersonalInformation attribute) copyNumber (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.PendingCnvDataItem attribute) copyNumbers (varvis_connector.models.CnvRelativesDataItem attribute) country (varvis_connector.models.PersonPersonalInformation attribute) (varvis_connector.models.PersonUpdateData attribute) CoverageData (class in varvis_connector.models) create_or_update_person() (varvis_connector._varvis_client.VarvisClient method) create_or_update_virtual_panel() (varvis_connector._varvis_client.VarvisClient method) creationTime (varvis_connector.models.VirtualPanelSummary attribute) creator (varvis_connector.models.VirtualPanelSummary attribute) currentlyArchived (varvis_connector.models.ApiFileLink attribute) customerProvidedInputFilePaths (varvis_connector.models.AnalysisFileDownloadLinks attribute) cytoband (varvis_connector.models.PendingCnvDataItem attribute)

D

data (varvis_connector.models.CnvTargetResults attribute) (varvis_connector.models.PendingCnvData attribute) (varvis_connector.models.QCCaseMetricResultDataItem attribute) (varvis_connector.models.QCCaseMetricResultItem attribute) (varvis_connector.models.SnvAnnotationData attribute) dataDictionary (varvis_connector.models.BaseHeaderItem attribute) dataType (varvis_connector.models.BaseHeaderItem attribute) DECIPHER_found (varvis_connector.models.CnvAnnotations attribute) DECIPHER_sig (varvis_connector.models.CnvAnnotations attribute) DECIPHER_type (varvis_connector.models.CnvAnnotations attribute) defaultLowerBound (varvis_connector.models.QCCaseMetricThresholdRangeBound attribute) defaultUpperBound (varvis_connector.models.QCCaseMetricThresholdRangeBound attribute) description (varvis_connector.models.BaseHeaderItem attribute) (varvis_connector.models.PersonHpoTerm attribute) (varvis_connector.models.PersonHpoTermDiseaseModifier attribute) (varvis_connector.models.QCCaseMetricThresholdRangeCategory attribute) (varvis_connector.models.QCCaseMetricType attribute) (varvis_connector.models.QCCaseMetricTypeDimension attribute) (varvis_connector.models.VirtualPanelData attribute) (varvis_connector.models.VirtualPanelSummary attribute) (varvis_connector.models.VirtualPanelUpdateData attribute)

detectedSegmentId (varvis_connector.models.PendingCnvDataItem attribute) DGV_found (varvis_connector.models.CnvAnnotations attribute) DGV_subtype (varvis_connector.models.CnvAnnotations attribute) dimension (varvis_connector.models.QCCaseMetricResultDataItem attribute) dimensions (varvis_connector.models.QCCaseMetricType attribute) disabledAnnotationFields (varvis_connector.models.QCCaseMetricEnrichmentKit attribute) disease (varvis_connector.models.CaseReportConclusion attribute) diseases (varvis_connector.models.CaseReportConclusion attribute) (varvis_connector.models.PersonClinicalInformation attribute) displayName (varvis_connector.models.QCCaseMetricEnrichmentKitDisabledAnnotationField attribute) download_files() (varvis_connector._varvis_client.VarvisClient method) download_files_from_urls_parallel() (varvis_connector._varvis_client.VarvisClient method) downloadLink (varvis_connector.models.ApiFileLink attribute) draft (varvis_connector.models.CaseReport attribute) dupThreshold (varvis_connector.models.ThresholdSettings attribute)

E

end (varvis_connector.models.CoverageData attribute) (varvis_connector.models.GenomicPosition attribute) enrichmentKit (varvis_connector.models.CaseReportAnalysis attribute) enrichmentKitId (varvis_connector.models.FindByInputFileNameAnalysisItem attribute) enrichmentKitName (varvis_connector.models.AnalysisItem attribute) enrichmentKits (varvis_connector.models.QCCaseMetricThresholdRanges attribute) ensemblId (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.VarvisGene attribute)

estimatedRestoreTime (varvis_connector.models.ApiFileLink attribute) exactBreakpointBegin (varvis_connector.models.PendingCnvDataItem attribute) exactBreakpointEnd (varvis_connector.models.PendingCnvDataItem attribute) exonNumbers (varvis_connector.models.CoverageData attribute) exons (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.PendingCnvDataItem attribute)

F

familyId (varvis_connector.models.CaseReportPersonItem attribute) (varvis_connector.models.PersonPersonalInformation attribute) (varvis_connector.models.PersonUpdateData attribute) fileName (varvis_connector.models.ApiFileLink attribute) filter (varvis_connector.models.CaseReportAppliedFilter attribute) filterApplied (varvis_connector.models.SnvAnnotationData attribute) find_analyses_by_filename() (varvis_connector._varvis_client.VarvisClient method)

FindByInputFileNameAnalysisItem (class in varvis_connector.models) finishedDate (varvis_connector.models.FindByInputFileNameAnalysisItem attribute) firstAnnotated (varvis_connector.models.AnalysisItem attribute) firstName (varvis_connector.models.PersonPersonalInformation attribute) (varvis_connector.models.PersonUpdateData attribute) fixedValues (varvis_connector.models.QCCaseMetricThresholdRangeBound attribute) fromMultiValue (varvis_connector.models.BaseHeaderItem attribute)

G

gene (varvis_connector.models.CoverageData attribute) geneIds (varvis_connector.models.PendingCnvDataItem attribute) (varvis_connector.models.VirtualPanelUpdateData attribute) geneIdToHpoMatchedTerms (varvis_connector.models.CnvTargetResults attribute) geneIdToHpoMoiTerms (varvis_connector.models.CnvTargetResults attribute) geneIdToHpoSimScore (varvis_connector.models.CnvTargetResults attribute) geneIdToHpoTerms (varvis_connector.models.CnvTargetResults attribute) genes (varvis_connector.models.CaseReportSnvConclusion attribute) (varvis_connector.models.CaseReportVirtualPanelItem attribute) (varvis_connector.models.VirtualPanelData attribute) GenomicPosition (class in varvis_connector.models) genotype (varvis_connector.models.CaseReportConclusion attribute) get_all_genes() (varvis_connector._varvis_client.VarvisClient method) get_analyses() (varvis_connector._varvis_client.VarvisClient method)

get_case_report() (varvis_connector._varvis_client.VarvisClient method) get_cnv_target_results() (varvis_connector._varvis_client.VarvisClient method) get_coverage_data() (varvis_connector._varvis_client.VarvisClient method) get_file_download_links() (varvis_connector._varvis_client.VarvisClient method) get_internal_person_id() (varvis_connector._varvis_client.VarvisClient method) get_pending_cnv_segments() (varvis_connector._varvis_client.VarvisClient method) get_person() (varvis_connector._varvis_client.VarvisClient method) get_person_analyses() (varvis_connector._varvis_client.VarvisClient method) get_qc_case_metrics() (varvis_connector._varvis_client.VarvisClient method) get_report_info_for_persons() (varvis_connector._varvis_client.VarvisClient method) get_snv_annotations() (varvis_connector._varvis_client.VarvisClient method) get_virtual_panel() (varvis_connector._varvis_client.VarvisClient method) get_virtual_panel_summaries() (varvis_connector._varvis_client.VarvisClient method) grid (varvis_connector.models.QCCaseMetricTypeDimension attribute) groupingKey (varvis_connector.models.QCCaseMetricResultDataItem attribute)

H

header (varvis_connector.models.SnvAnnotationData attribute) hetDelThreshold (varvis_connector.models.ThresholdSettings attribute) hgncId (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.VarvisGene attribute) hgvs (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.PendingCnvDataItem attribute)

homDelThreshold (varvis_connector.models.ThresholdSettings attribute) HpoTerm (class in varvis_connector.models) hpoTermIds (varvis_connector.models.PersonUpdateData attribute) hpoTerms (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.CaseReportPersonItem attribute) (varvis_connector.models.PersonClinicalInformation attribute) (varvis_connector.models.VarvisGene attribute)

I

icd10Id (varvis_connector.models.CaseReportDisease attribute) id (varvis_connector.models.AnalysisFileDownloadLinks attribute) (varvis_connector.models.AnalysisItem attribute) (varvis_connector.models.BaseHeaderItem attribute) (varvis_connector.models.CaseReportDisease attribute) (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.PersonUpdateData attribute) (varvis_connector.models.QCCaseMetricEnrichmentKit attribute) (varvis_connector.models.QCCaseMetricThresholdRangeCategory attribute) (varvis_connector.models.QCCaseMetricType attribute) (varvis_connector.models.QCCaseMetricTypeDimension attribute) (varvis_connector.models.VariantSignificance attribute) (varvis_connector.models.VarvisGene attribute) (varvis_connector.models.VirtualPanelData attribute) (varvis_connector.models.VirtualPanelSummary attribute) (varvis_connector.models.VirtualPanelUpdateData attribute)

index (varvis_connector.models.PendingCnvDataItem attribute) inheritance (varvis_connector.models.PendingCnvDataItem attribute) iscn (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.PendingCnvDataItem attribute) items (varvis_connector.models.CaseReport attribute)

J

jobName (varvis_connector.models.AnalysisItem attribute)

L

lane (varvis_connector.models.QCCaseMetricResultGroupingKey attribute) laneQuality (varvis_connector.models.CoverageData attribute) lastAnnotated (varvis_connector.models.AnalysisItem attribute) lastName (varvis_connector.models.PersonPersonalInformation attribute) (varvis_connector.models.PersonUpdateData attribute) latestComment (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.CaseReportSnvConclusion attribute) length (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.CoverageData attribute) lengthOfTranscriptsCds (varvis_connector.models.VirtualPanelSummary attribute) level (varvis_connector.models.PersonDisease attribute) (varvis_connector.models.PersonHpoTerm attribute) limsId (varvis_connector.models.AnalysisFileDownloadLinks attribute) (varvis_connector.models.CaseReportPersonItem attribute) (varvis_connector.models.PersonClinicalInformation attribute) (varvis_connector.models.PersonPersonalInformation attribute) (varvis_connector.models.PersonReportItem attribute)

linkedAnalysisId (varvis_connector.models.QCCaseMetricResultDataItem attribute) (varvis_connector.models.QCCaseMetricResultGroupingKey attribute) localFoundGain (varvis_connector.models.CnvAnnotations attribute) (varvis_connector.models.PendingCnvDataItem attribute) localFoundLoss (varvis_connector.models.CnvAnnotations attribute) (varvis_connector.models.PendingCnvDataItem attribute) localSignificanceGain (varvis_connector.models.CnvAnnotations attribute) (varvis_connector.models.PendingCnvDataItem attribute) localSignificanceLoss (varvis_connector.models.CnvAnnotations attribute) (varvis_connector.models.PendingCnvDataItem attribute) log2 (varvis_connector.models.CaseReportCnvConclusion attribute) log2Value (varvis_connector.models.PendingCnvDataItem attribute) logged_in (varvis_connector._varvis_client.VarvisClient property) login() (varvis_connector._varvis_client.VarvisClient method) logout() (varvis_connector._varvis_client.VarvisClient method) lowerBound (varvis_connector.models.QCCaseMetricThresholdRangeBound attribute) lrgId (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.VarvisGene attribute)

M

mappedData (varvis_connector.models.QCCaseMetricResultDataItem attribute) markedForApproval (varvis_connector.models.PersonReportItem attribute) matchingCustomerProvidedInputFilePath (varvis_connector.models.FindByInputFileNameAnalysisItem attribute) matchingOriginalFileName (varvis_connector.models.FindByInputFileNameAnalysisItem attribute) maximumCoverage (varvis_connector.models.CoverageData attribute) maxValidBivariance (varvis_connector.models.CnvTargetResults attribute) meanCoverage (varvis_connector.models.CnvTargetResults attribute) (varvis_connector.models.CoverageData attribute) metricResults (varvis_connector.models.QCCaseMetricResults attribute) (varvis_connector.models.QCCaseMetricsData attribute) metricTypes (varvis_connector.models.QCCaseMetricsData attribute) minimumCoverage (varvis_connector.models.CoverageData attribute) model_config (varvis_connector.models.AnalysisApproval attribute) (varvis_connector.models.AnalysisFileDownloadLinks attribute) (varvis_connector.models.AnalysisItem attribute) (varvis_connector.models.ApiFileLink attribute) (varvis_connector.models.BaseHeaderItem attribute) (varvis_connector.models.CaseReport attribute) (varvis_connector.models.CaseReportAnalysis attribute) (varvis_connector.models.CaseReportAnnotationSource attribute) (varvis_connector.models.CaseReportAppliedFilter attribute) (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.CaseReportConclusion attribute) (varvis_connector.models.CaseReportDisease attribute) (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.CaseReportMethodsItem attribute) (varvis_connector.models.CaseReportPersonItem attribute) (varvis_connector.models.CaseReportSnvConclusion attribute) (varvis_connector.models.CaseReportVirtualPanelItem attribute) (varvis_connector.models.CnvAnnotations attribute) (varvis_connector.models.CnvHeaderItem attribute) (varvis_connector.models.CnvRelativesDataItem attribute) (varvis_connector.models.CnvTargetResults attribute) (varvis_connector.models.CoverageData attribute) (varvis_connector.models.FindByInputFileNameAnalysisItem attribute) (varvis_connector.models.GenomicPosition attribute) (varvis_connector.models.HpoTerm attribute) (varvis_connector.models.PendingCnvData attribute) (varvis_connector.models.PendingCnvDataItem attribute) (varvis_connector.models.PersonClinicalInformation attribute) (varvis_connector.models.PersonData attribute) (varvis_connector.models.PersonDisease attribute) (varvis_connector.models.PersonHpoTerm attribute) (varvis_connector.models.PersonHpoTermDiseaseModifier attribute) (varvis_connector.models.PersonPersonalInformation attribute) (varvis_connector.models.PersonReportItem attribute) (varvis_connector.models.PersonUpdateData attribute) (varvis_connector.models.QCCaseMetricEnrichmentKit attribute) (varvis_connector.models.QCCaseMetricEnrichmentKitDisabledAnnotationField attribute) (varvis_connector.models.QCCaseMetricResultDataItem attribute) (varvis_connector.models.QCCaseMetricResultGroupingKey attribute) (varvis_connector.models.QCCaseMetricResultItem attribute) (varvis_connector.models.QCCaseMetricResults attribute) (varvis_connector.models.QCCaseMetricsData attribute) (varvis_connector.models.QCCaseMetricThresholdRangeBound attribute) (varvis_connector.models.QCCaseMetricThresholdRangeCategory attribute) (varvis_connector.models.QCCaseMetricThresholdRanges attribute) (varvis_connector.models.QCCaseMetricType attribute) (varvis_connector.models.QCCaseMetricTypeDimension attribute) (varvis_connector.models.SnvAnnotationData attribute) (varvis_connector.models.SnvAnnotationHeaderItem attribute) (varvis_connector.models.ThresholdSettings attribute) (varvis_connector.models.VariantSignificance attribute) (varvis_connector.models.VarvisGene attribute) (varvis_connector.models.VirtualPanelData attribute) (varvis_connector.models.VirtualPanelSummary attribute) (varvis_connector.models.VirtualPanelUpdateData attribute)

modeOfInheritance (varvis_connector.models.CaseReportConclusion attribute) modifiers (varvis_connector.models.PersonDisease attribute) (varvis_connector.models.PersonHpoTerm attribute) module varvis_connector._varvis_client varvis_connector.errors varvis_connector.models mosaic (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.PendingCnvDataItem attribute) mosaicRelation (varvis_connector.models.PendingCnvDataItem attribute) multiDupThreshold (varvis_connector.models.ThresholdSettings attribute)

N

name (varvis_connector.models.CaseReportAnnotationSource attribute) (varvis_connector.models.CaseReportAppliedFilter attribute) (varvis_connector.models.CaseReportDisease attribute) (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.CaseReportVirtualPanelItem attribute) (varvis_connector.models.HpoTerm attribute) (varvis_connector.models.PersonDisease attribute) (varvis_connector.models.PersonHpoTerm attribute) (varvis_connector.models.PersonHpoTermDiseaseModifier attribute) (varvis_connector.models.QCCaseMetricEnrichmentKit attribute) (varvis_connector.models.QCCaseMetricEnrichmentKitDisabledAnnotationField attribute) (varvis_connector.models.QCCaseMetricThresholdRangeCategory attribute) (varvis_connector.models.QCCaseMetricTypeDimension attribute) (varvis_connector.models.VariantSignificance attribute) (varvis_connector.models.VarvisGene attribute) (varvis_connector.models.VirtualPanelData attribute) (varvis_connector.models.VirtualPanelSummary attribute) (varvis_connector.models.VirtualPanelUpdateData attribute)

ncbiId (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.VarvisGene attribute) numberOfGenesInPanel (varvis_connector.models.VirtualPanelSummary attribute)

O

omimId (varvis_connector.models.CaseReportDisease attribute) (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.VarvisGene attribute) order (varvis_connector.models.QCCaseMetricThresholdRangeCategory attribute)

orphanetId (varvis_connector.models.CaseReportDisease attribute) otherOverlapParam (varvis_connector.models.PendingCnvDataItem attribute) overlapOperator (varvis_connector.models.PendingCnvDataItem attribute) overlapParam (varvis_connector.models.PendingCnvDataItem attribute)

P

parentageConfirmed (varvis_connector.models.PersonClinicalInformation attribute) PendingCnvData (class in varvis_connector.models) PendingCnvDataItem (class in varvis_connector.models) pendingCnvId (varvis_connector.models.PendingCnvDataItem attribute) percentCovered (varvis_connector.models.CoverageData attribute) personalInformation (varvis_connector.models.PersonData attribute) PersonClinicalInformation (class in varvis_connector.models) PersonData (class in varvis_connector.models) PersonDisease (class in varvis_connector.models) PersonHpoTerm (class in varvis_connector.models) PersonHpoTermDiseaseModifier (class in varvis_connector.models) personId (varvis_connector.models.CaseReport attribute) (varvis_connector.models.CaseReportPersonItem attribute) (varvis_connector.models.FindByInputFileNameAnalysisItem attribute) (varvis_connector.models.QCCaseMetricResults attribute) (varvis_connector.models.VirtualPanelData attribute) (varvis_connector.models.VirtualPanelSummary attribute) (varvis_connector.models.VirtualPanelUpdateData attribute)

personLimsId (varvis_connector.models.AnalysisItem attribute) PersonPersonalInformation (class in varvis_connector.models) PersonReportItem (class in varvis_connector.models) PersonUpdateData (class in varvis_connector.models) position (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.CaseReportSnvConclusion attribute) (varvis_connector.models.PendingCnvDataItem attribute) presence (varvis_connector.models.PersonDisease attribute) (varvis_connector.models.PersonHpoTerm attribute) property (varvis_connector.models.CnvHeaderItem attribute) (varvis_connector.models.SnvAnnotationHeaderItem attribute)

Q

QCCaseMetricEnrichmentKit (class in varvis_connector.models) QCCaseMetricEnrichmentKitDisabledAnnotationField (class in varvis_connector.models) QCCaseMetricResultDataItem (class in varvis_connector.models) QCCaseMetricResultGroupingKey (class in varvis_connector.models) QCCaseMetricResultItem (class in varvis_connector.models) QCCaseMetricResults (class in varvis_connector.models)

QCCaseMetricsData (class in varvis_connector.models) QCCaseMetricThresholdRangeBound (class in varvis_connector.models) QCCaseMetricThresholdRangeCategory (class in varvis_connector.models) QCCaseMetricThresholdRanges (class in varvis_connector.models) QCCaseMetricType (class in varvis_connector.models) QCCaseMetricTypeDimension (class in varvis_connector.models) qualityMetricTypes (varvis_connector.models.QCCaseMetricResultItem attribute)

R

ranges (varvis_connector.models.QCCaseMetricThresholdRanges attribute) recentComment (varvis_connector.models.PendingCnvDataItem attribute) referenceAnalysisId (varvis_connector.models.QCCaseMetricResultItem attribute) referencedAnalysisId (varvis_connector.models.AnalysisItem attribute) refSpread (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.PendingCnvDataItem attribute) refSpreadThreshold (varvis_connector.models.CnvTargetResults attribute) regionIndexBegin (varvis_connector.models.PendingCnvDataItem attribute)

regionIndexEnd (varvis_connector.models.PendingCnvDataItem attribute) regionInfo (varvis_connector.models.PendingCnvDataItem attribute) regionName (varvis_connector.models.CoverageData attribute) regulatoryStatus (varvis_connector.models.AnalysisItem attribute) relativeAnalysisIds (varvis_connector.models.PendingCnvDataItem attribute) relativesData (varvis_connector.models.PendingCnvDataItem attribute) reportState (varvis_connector.models.CaseReport attribute) request() (varvis_connector._varvis_client.VarvisClient method)

S

sampleId (varvis_connector.models.AnalysisFileDownloadLinks attribute) (varvis_connector.models.AnalysisItem attribute) (varvis_connector.models.CaseReportAnalysis attribute) (varvis_connector.models.QCCaseMetricResultItem attribute) sampleIds (varvis_connector.models.QCCaseMetricResults attribute) sampleOrigin (varvis_connector.models.AnalysisItem attribute) (varvis_connector.models.FindByInputFileNameAnalysisItem attribute) segmentationThresholds (varvis_connector.models.CnvTargetResults attribute) selected (varvis_connector.models.CaseReportAnalysis attribute) selectedPaper (varvis_connector.models.CaseReportSnvConclusion attribute) sequencingBatchesMetricResults (varvis_connector.models.QCCaseMetricResults attribute) sequencingBatchId (varvis_connector.models.AnalysisItem attribute) (varvis_connector.models.QCCaseMetricResultDataItem attribute) (varvis_connector.models.QCCaseMetricResultItem attribute) sex (varvis_connector.models.CnvTargetResults attribute) (varvis_connector.models.PersonPersonalInformation attribute) (varvis_connector.models.PersonUpdateData attribute) shortName (varvis_connector.models.CaseReportDisease attribute) (varvis_connector.models.PersonDisease attribute)

significance (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.CaseReportSnvConclusion attribute) SnvAnnotationData (class in varvis_connector.models) SnvAnnotationHeaderItem (class in varvis_connector.models) snvConclusions (varvis_connector.models.CaseReportConclusion attribute) sourceId (varvis_connector.models.AnalysisItem attribute) (varvis_connector.models.CaseReportAnalysis attribute) (varvis_connector.models.CoverageData attribute) start (varvis_connector.models.CoverageData attribute) (varvis_connector.models.GenomicPosition attribute) status (varvis_connector.models.AnalysisApproval attribute) (varvis_connector.models.AnalysisItem attribute) submitted (varvis_connector.models.CaseReport attribute) submitter (varvis_connector.models.CaseReport attribute) symbol (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.VarvisGene attribute) synomys (varvis_connector.models.PersonHpoTerm attribute) (varvis_connector.models.PersonHpoTermDiseaseModifier attribute)

T

targetRegionsHeader (varvis_connector.models.CnvTargetResults attribute) threshold (varvis_connector.models.QCCaseMetricTypeDimension attribute) (varvis_connector.models.SnvAnnotationData attribute) thresholdRanges (varvis_connector.models.QCCaseMetricsData attribute) thresholds (varvis_connector.models.CnvTargetResults attribute) ThresholdSettings (class in varvis_connector.models) thresholdViolated (varvis_connector.models.SnvAnnotationData attribute) timeApproved (varvis_connector.models.PersonReportItem attribute) timeSubmitted (varvis_connector.models.PersonReportItem attribute) title (varvis_connector.models.BaseHeaderItem attribute) (varvis_connector.models.CaseReport attribute) (varvis_connector.models.QCCaseMetricThresholdRangeCategory attribute) (varvis_connector.models.QCCaseMetricType attribute) transcript (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.CaseReportSnvConclusion attribute) (varvis_connector.models.CoverageData attribute) (varvis_connector.models.VarvisGene attribute)

transcriptCdsLength (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.VarvisGene attribute) transcriptExonCount (varvis_connector.models.CaseReportGene attribute) (varvis_connector.models.VarvisGene attribute) transcriptNcbiIds (varvis_connector.models.PendingCnvDataItem attribute) transcripts (varvis_connector.models.CaseReportCnvConclusion attribute) type (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.CaseReportMethodsItem attribute) (varvis_connector.models.CaseReportPersonItem attribute) (varvis_connector.models.CaseReportVirtualPanelItem attribute) (varvis_connector.models.PendingCnvDataItem attribute) (varvis_connector.models.QCCaseMetricResultDataItem attribute) (varvis_connector.models.QCCaseMetricResultGroupingKey attribute) (varvis_connector.models.QCCaseMetricType attribute) types (varvis_connector.models.CnvRelativesDataItem attribute) (varvis_connector.models.QCCaseMetricThresholdRangeCategory attribute)

U

uniqueCnvPersonLabelSuffixes (varvis_connector.models.SnvAnnotationData attribute) uniquePersonLabelSuffixes (varvis_connector.models.CnvTargetResults attribute) (varvis_connector.models.SnvAnnotationData attribute) upperBound (varvis_connector.models.QCCaseMetricThresholdRangeBound attribute)

url (varvis_connector.models.BaseHeaderItem attribute) usageCount (varvis_connector.models.VirtualPanelSummary attribute) userId (varvis_connector.models.AnalysisApproval attribute) userName (varvis_connector.models.AnalysisApproval attribute)

V

validationStatus (varvis_connector.models.PersonPersonalInformation attribute) value (varvis_connector.models.CaseReportAnnotationSource attribute) variant (varvis_connector.models.CaseReportCnvConclusion attribute) (varvis_connector.models.CaseReportSnvConclusion attribute) variantCategory (varvis_connector.models.CaseReportConclusion attribute) VariantSignificance (class in varvis_connector.models) varvis_connector._varvis_client module varvis_connector.errors module

varvis_connector.models module VarvisClient (class in varvis_connector._varvis_client) VarvisError VarvisGene (class in varvis_connector.models) violated (varvis_connector.models.QCCaseMetricResultDataItem attribute) VirtualPanelData (class in varvis_connector.models) virtualPanelId (varvis_connector.models.CaseReportVirtualPanelItem attribute) VirtualPanelSummary (class in varvis_connector.models) VirtualPanelUpdateData (class in varvis_connector.models)

W

wgs (varvis_connector.models.CnvTargetResults attribute)